PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010925243.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 307aa    MW: 33706.1 Da    PI: 8.9805
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010925243.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.6e-1080104126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f   G C+ G++C+FaHg
  XP_010925243.1  80 FKTRLCQKFKT-GSCPWGSNCNFAHG 104
                     79*********.*************8 PP

2zf-CCCH24.83.8e-08136158426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++Cr f+ +  C+yGdrC++ H+
  XP_010925243.1 136 KICRKFYNGEVCPYGDRCTYLHV 158
                     79******66************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.04E-976110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-1778112IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-579105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.9179106IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-780104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-9132161IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-7132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385132160IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4134159IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5136158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5204234IPR000571Zinc finger, CCCH-type
SMARTSM0035619209230IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVTPPDQASA SFIPHPPLLL AAASSDDVIM LQPKNPADLA EFEAPPFKRP RNWDGVPLNP  60
LAAIPAPPNP PTRGTNYMFF KTRLCQKFKT GSCPWGSNCN FAHGIEELRQ PPPNWQELVA  120
GERVNGNDRQ RIHKNKICRK FYNGEVCPYG DRCTYLHVER ESSAMAVGSM PGPEKGGHGS  180
GLHNSDSTGG FRSAGDCNGS NQRLKVRIRY KWETTGHCSF GEKGIYAHSH AELKKSGGHG  240
ELDSAKIGAA PSKPLSNSTN DVPFIKTEST CMRQAQQKKS VFPNLAKKLS CIYADWIDDV  300
PLFSRTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925243.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2293446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-42C3H family protein